PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.385700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 302aa    MW: 34650.2 Da    PI: 4.5633
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.385700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-11124167755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + ErrRR r+++++  Lr+l+P+      +K++Ka+i+  Av Y+k+Lq
  Cucsa.385700.1 124 ISERRRRGRMKEKLYALRSLVPNI-----TKMDKASIVGDAVLYVKELQ 167
                     68*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.224117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-16118187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.97E-11119169No hitNo description
Gene3DG3DSA:4.10.280.105.2E-17119187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-13123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-9124167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MTDINDQFEL QDFIHGDNFD QYVNLIRGGN ETPIFNNNFD LDFMNGCLIE NRVVDQSLEY  60
IVDSNMVMNS DPNSLFSTLE SFNSIMKEVE DEDEDEDEDE NESVENSSST TSKKPKADRT  120
RTLISERRRR GRMKEKLYAL RSLVPNITKM DKASIVGDAV LYVKELQMQA KKLKAEISVL  180
ESSINETQKV HRDQTKKKII QTSYSDQFLP TKIIQLDVFQ VEERGFYLRL VCKMGERVAM  240
SLYKVLESLT SFIIQSSNLT SASDRFILTA TINVRDCEVD MNLPNLKLWL TGALLNHGFE  300
F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819230.0LN681923.1 Cucumis melo genomic scaffold, anchoredscaffold00118.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145819.10.0PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
SwissprotQ0V7X43e-90FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A0A0KDF41e-103A0A0A0KDF4_CUCSA; Uncharacterized protein
STRINGVIT_06s0061g00720.t012e-97(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36793358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.16e-72FER-like regulator of iron uptake